Stem-loop csi-MIR160c

Accession

MI0039624

Description

Citrus sinensis csi-MIR160c precursor miRNA

Literature search

4 open access papers mention csi-MIR160c
(24 sentences)

Sequence

5217 reads, 327.0 reads per million, 16 experiments

ugauauauaguaUGCCUGGCUCCCUGUAUGCUUuuugcaaagcccaucagaagauugguggucuuggcggauAGCGUGCGAGGAGCCAUGCAUGcuaaauuuag
.......((((((((.(((((((.((((((((.(((((.(((.((((((......)))))).))).))))).)))))))).))))))).)))))))).......

Structure

ugauaua        C       C        U     a   c      ga 
       uaguaUGC UGGCUCC UGUAUGCU uuugc aag ccauca  a
       |||||||| ||||||| |||||||| ||||| ||| ||||||   
       aucGUACG ACCGAGG GCGUGCGA aggcg uuc gguggu  g
gauuuaa        U       A        u     g   u      ua 

Annotation confidence High

Genome context

chr6: 12796053-12796156 [-]

Mature csi-miR160c-5p

• Accession: MIMAT0048866
• Description: Citrus sinensis csi-miR160c-5p mature miRNA
• Sequence: 13 - UGCCUGGCUCCCUGUAUGCUU - 33
• Evidence: experimental ; Illumina [1]

Mature csi-miR160c-3p

• Accession: MIMAT0048867
• Description: Citrus sinensis csi-miR160c-3p mature miRNA
• Sequence: 73 - AGCGUGCGAGGAGCCAUGCAUG - 94
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 28054378
   MicroRNA annotation of plant genomes - Do it right or not at all
   "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
   Bioessays (2017) 39:1600113