Stem-loop csi-MIR160b

Accession

MI0039623

Description

Citrus sinensis csi-MIR160b precursor miRNA

Literature search

4 open access papers mention csi-MIR160b
(24 sentences)

Sequence

guuucuaaagaaggugaaauuaauggguuaUGCCUGGCUCCCUGUAUGCCGcaagcagacgacaaucugccggagauuggccguugcuggugGCGUACGAGGAGCCAAGCAUAcuauucuuccuucccuuucucuuuauaugc
.....(((((((((.(((...(((((..(((((.(((((((.((((((((((.(((((.((.((((((.....))))))..))))))).)))))))))).))))))).)))))))))).....))))))...)))))).....

Structure

guuuc      ---   u   --auu     gu     C       C          a     a  -a      g 
     uaaaga   agg gaa     aaugg  uaUGC UGGCUCC UGUAUGCCGc agcag cg  caaucu c
     ||||||   ||| |||     |||||  ||||| ||||||| |||||||||| ||||| ||  |||||| c
     auuucu   ucc cuu     uuauc  AUACG ACCGAGG GCAUGCGgug ucguu gc  guuaga g
cguau      cuu   -   ccuuc     --     A       A          g     -  cg      g 

Annotation confidence Not enough data

Genome context

chr2: 7769210-7769352 [+]

Mature csi-miR160b-5p

• Accession: MIMAT0048864
• Description: Citrus sinensis csi-miR160b-5p mature miRNA
• Sequence: 31 - UGCCUGGCUCCCUGUAUGCCG - 51
• Evidence: experimental ; Illumina [1]

Mature csi-miR160b-3p

• Accession: MIMAT0048865
• Description: Citrus sinensis csi-miR160b-3p mature miRNA
• Sequence: 93 - GCGUACGAGGAGCCAAGCAUA - 113
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 28054378
   MicroRNA annotation of plant genomes - Do it right or not at all
   "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
   Bioessays (2017) 39:1600113