Accession
MI0039680
Description
Citrus sinensis
csi-MIR3627a precursor miRNA
Sequence
6237
reads,
858.0
reads per million, 16 experiments
gcaggagagagaggggggcuacagggauucUUGUCGCCGGAGAGAUAGCACCuacuaccucuuaauugcauuaacuaaguugugcauaaauaacgccguaagCGCCAUCUCCCGGUGACAAGAcucccuucauccucuauauauauauaucaa
...((((.((((((((((..........((((((((((((.(((((.((.(.(((...........(((((.(((...))))))))...........))).).)).))))))))))))))))))))))))).))))))...............
...((((.((((((((((..........((((((((((((.(((((.((.(.(((...........(((((.(((...))))))))...........))).).)).))))))))))))))))))))))))).))))))...............
Structure
------------gca a - cuacagggau A A A C uaccucuuaau u u
ggag ga gagggggg ucUUGUCGCCGG GAGAU GC C uac ugcau aac
|||| || |||||||| |||||||||||| ||||| || | ||| ||||| ||| a
ucuc cu cuucccuc AGAACAGUGGCC CUCUA CG g aug acgug uug
aacuauauauauaua - a ---------- - C C a ccgcaauaaau - a
Annotation confidence
High
Do you think this miRNA is real?
Genome context
chr6: 19940722-19940874 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from csi-MIR3627a
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature csi-miR3627a-5p
| Accession | MIMAT0048954 |
| Description | Citrus sinensis csi-miR3627a-5p mature miRNA |
| Sequence | 31 - UUGUCGCCGGAGAGAUAGCACC - 52 |
| Evidence |
experimental
Illumina [1] |
Mature csi-miR3627a-3p
| Accession | MIMAT0057191 |
| Description | Citrus sinensis csi-miR3627a-3p mature miRNA |
| Sequence | 103 - CGCCAUCUCCCGGUGACAAGA - 123 |
| Evidence |
experimental
unknown |
References
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