Stem-loop csi-MIR12109

Accession

MI0039695

Description

Citrus sinensis csi-MIR12109 precursor miRNA

Sequence

uugaacaguagaaauagcugaugugucugcUGCUUGGUGCAUAAAACUACAGAAacaauacaugcuuCUGCAGAUUUGUGCAUUAAGCUGCagaaacaguugcaaaucuuacugauaaaua
.....((((((.....((...(((.(((((.((((((((((((((.((.(((((.((.....)).))))).)).)))))))))))))).))))).)))...)).....)))))).......

Structure

--uugaa      aaaua  uga   g     U              A  A     a  a 
       caguag     gc   ugu ucugc GCUUGGUGCAUAAA CU CAGAA ca u
       ||||||     ||   ||| ||||| |||||||||||||| || ||||| || a
       gucauu     cg   aca agaCG CGAAUUACGUGUUU GA GUCuu gu c
auaaaua      cuaaa  uug   a     U              A  C     c  a 

Annotation confidence Not enough data

Genome context

chr7: 23942692-23942812 [+]

Mature csi-miR12109-5p

• Accession: MIMAT0048977
• Description: Citrus sinensis csi-miR12109-5p mature miRNA
• Sequence: 31 - UGCUUGGUGCAUAAAACUACAGAA - 54
• Evidence: experimental ; Illumina [1]

Mature csi-miR12109-3p

• Accession: MIMAT0048978
• Description: Citrus sinensis csi-miR12109-3p mature miRNA
• Sequence: 68 - CUGCAGAUUUGUGCAUUAAGCUGC - 91
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 28054378
   MicroRNA annotation of plant genomes - Do it right or not at all
   "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
   Bioessays (2017) 39:1600113