Stem-loop csi-MIR167d

Accession

MI0039635

Description

Citrus sinensis csi-MIR167d precursor miRNA

Literature search

4 open access papers mention csi-MIR167d
(5 sentences)

Sequence

cagcagcaguUGAAGCUGCCAGCAUGAUCUAaacuuccuucacugucaaggauagAUCGGAUCAUGUGGUAGCUUCACCuguugauc
...((((((.(((((((((((.((((((((...(((((((.......))))).))...))))))))))))))))))).))))))...

Structure

cag      u           G        Aaa  -     ca 
   cagcag UGAAGCUGCCA CAUGAUCU   cu uccuu  c
   |||||| ||||||||||| ||||||||   || |||||  u
   guuguC ACUUCGAUGGU GUACUAGG   ga aggaa  g
cua      C           -        CUA  u     cu 

Annotation confidence Not enough data

Genome context

chr5: 32492102-32492188 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from csi-MIR167d

Mature csi-miR167d-5p

• Accession: MIMAT0048884
• Description: Citrus sinensis csi-miR167d-5p mature miRNA
• Sequence: 11 - UGAAGCUGCCAGCAUGAUCUA - 31
• Evidence: experimental ; Illumina [1]

Mature csi-miR167d-3p

• Accession: MIMAT0048885
• Description: Citrus sinensis csi-miR167d-3p mature miRNA
• Sequence: 56 - AUCGGAUCAUGUGGUAGCUUCACC - 79
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 28054378
   MicroRNA annotation of plant genomes - Do it right or not at all
   "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
   Bioessays (2017) 39:1600113