Stem-loop csi-MIR399e

Accession

MI0039669

Description

Citrus sinensis csi-MIR399e precursor miRNA

Literature search

4 open access papers mention csi-MIR399e
(12 sentences)

Sequence

caaaugaaucaaguguuuagaugcauuacuGGGCAAUUCUCUAUUGGCAGUuggcugcagggaggagcaaccuagcucacUGCCAAAGGAGAUUUGCCCGGcaauucaucugugcaaucauccuaauauuu
.............(((.((((((.(((.((((((((.(((((.((((((((.((((..(((.........))))))).)))))))).))))).)))))))).))).)))))).)))...............

Structure

--caaaugaaucaag   u      c   a        U     A        u    gc   gag 
               ugu uagaug auu cuGGGCAA UCUCU UUGGCAGU ggcu  agg   g
               ||| |||||| ||| |||||||| ||||| |||||||| ||||  |||   a
               acg gucuac uaa GGCCCGUU AGAGG AACCGUca ucga  ucc   g
uuuauaauccuacua   u      u   c        U     A        c    --   aac 

Annotation confidence Not enough data

Genome context

chr2: 2305516-2305646 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from csi-MIR399e

Mature csi-miR399e-5p

• Accession: MIMAT0048933
• Description: Citrus sinensis csi-miR399e-5p mature miRNA
• Sequence: 31 - GGGCAAUUCUCUAUUGGCAGU - 51
• Evidence: experimental ; Illumina [1]

Mature csi-miR399e-3p

• Accession: MIMAT0048934
• Description: Citrus sinensis csi-miR399e-3p mature miRNA
• Sequence: 81 - UGCCAAAGGAGAUUUGCCCGG - 101
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 28054378
   MicroRNA annotation of plant genomes - Do it right or not at all
   "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
   Bioessays (2017) 39:1600113