Stem-loop csi-MIR171e

Accession

MI0039652

Description

Citrus sinensis csi-MIR171e precursor miRNA

Literature search

3 open access papers mention csi-MIR171e
(3 sentences)

Sequence

2466 reads, 100.0 reads per million, 16 experiments

gaaggggagaguuguaaaaugaaaucaucaAGGUAUUGGCGCGCCUCAAUUUaaagacgugguuaagugggcaugauuagccauguauuuucaUUGAGCCGCGUCAAUAUCUCCuuaauuauuuuguaacucucuccucuauau
..((((((((((((((((((((........(((((((((((((.((((((..(((.((((((((((..........)))))))))).)))..)))))).)))))))))))))......))))))))))))))))))))......

Structure

----ga                    aaucauca             C      UU   g          gugg 
      aggggagaguuguaaaauga        AGGUAUUGGCGCG CUCAAU  aaa acgugguuaa    g
      ||||||||||||||||||||        ||||||||||||| ||||||  ||| ||||||||||     
      uccucucucaauguuuuauu        UCUAUAACUGCGC GAGUUa  uuu uguaccgauu    c
uauauc                    --aauuCC             C      cu   a          agua 

Annotation confidence High

Genome context

chr2: 18268665-18268808 [+]

Mature csi-miR171e-5p

• Accession: MIMAT0057184
• Description: Citrus sinensis csi-miR171e-5p mature miRNA
• Sequence: 31 - AGGUAUUGGCGCGCCUCAAUUU - 52
• Evidence: experimental ; unknown

Mature csi-miR171e-3p

• Accession: MIMAT0048909
• Description: Citrus sinensis csi-miR171e-3p mature miRNA
• Sequence: 94 - UUGAGCCGCGUCAAUAUCUCC - 114
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 28054378
   MicroRNA annotation of plant genomes - Do it right or not at all
   "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
   Bioessays (2017) 39:1600113