Stem-loop csi-MIR169b

Accession

MI0039637

Description

Citrus sinensis csi-MIR169b precursor miRNA

Literature search

5 open access papers mention csi-MIR169b
(12 sentences)

Sequence

ucucguuuugUAGCCAAGGAUGACUUGCCUggagccccucaacgguauucuuacuuauuuaucauuucucaaaauauacgaguuaauuaacauaaaaucagaucacgaaguagaguagugcuuacauucuacuucaagaaaaugaaaggacuguaguaucuuugagugguuugcaggccaucuccuuggcuagcaagauggcu
..((((((((((((((((((.((...((((((((((.(((((.(((((...(((...(((.(((((((((.........)))........................((((((((((.((....))))))))))))....)))))).)))...)))))))).))))).))))).)))))..))))))))))).)))))))))..

Structure

uc         -         U  CUU     -     c     c     ucu   uua   a      cucaaaauauacgaguuaauuaacauaaaaucagaucac          a  g 
  ucguuuugU AGCCAAGGA GA   GCCUg gagcc cucaa gguau   uac   uuu ucauuu                                       gaaguagagu gu c
  ||||||||| ||||||||| ||   ||||| ||||| ||||| |||||   |||   ||| ||||||                                       |||||||||| ||  
  gguagaacg ucgguuccu cu   cggac uuugg gaguu cuaug   aug   gga aguaaa                                       cuucaucuua ca u
uc         a         -  -ac     g     u     u     ---   uca   a      -----------------------------------agaa          -  u 

Annotation confidence Not enough data

Genome context

chr7: 1152858-1153060 [-]

Mature csi-miR169b-5p

• Accession: MIMAT0048888
• Description: Citrus sinensis csi-miR169b-5p mature miRNA
• Sequence: 11 - UAGCCAAGGAUGACUUGCCU - 30
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 28054378
   MicroRNA annotation of plant genomes - Do it right or not at all
   "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
   Bioessays (2017) 39:1600113