Stem-loop csi-MIR169f

Accession

MI0039641

Description

Citrus sinensis csi-MIR169f precursor miRNA

Literature search

5 open access papers mention csi-MIR169f
(12 sentences)

Sequence

agccuaacaugaagaaagaaccuuguuugaUAGCCAAGGAUGACUUGCCUugcuuuuaaagaaaggucucucaacuuuagcuuagcuacauauauagcuaguauccuugugcagguuccaaggcaagucgucuuuggcuauuuugacaggcucuuauuauucaugcuagacuu
...(((.((((((..((((.(((.(((.((((((((((((((((((((((((..........((((.............(((.(((((......))))))))..))))..........))))))))))))))))))))))))..)))))).))))....)))))).)))....

Structure

-agc   a      --ga    a   u   -u                        cuuuuaaaga    ucucucaacuuua   u     ca 
    cua caugaa    aaga ccu guu  gaUAGCCAAGGAUGACUUGCCUug          aagg             gcu agcua  u
    ||| ||||||    |||| ||| |||  ||||||||||||||||||||||||          ||||             ||| |||||   
    gau guacuu    uucu gga cag  uuaucgguuucugcugaacggaac          uucc             uga ucgau  a
uuca   c      auua    c   -   uu                        cuuggacgug    -----------ua   -     au 

Annotation confidence Not enough data

Genome context

chr6: 14255727-14255899 [-]

Mature csi-miR169f-5p

• Accession: MIMAT0048895
• Description: Citrus sinensis csi-miR169f-5p mature miRNA
• Sequence: 31 - UAGCCAAGGAUGACUUGCCU - 50
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 28054378
   MicroRNA annotation of plant genomes - Do it right or not at all
   "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
   Bioessays (2017) 39:1600113