Stem-loop csi-MIR156g

Accession

MI0039620

Description

Citrus sinensis csi-MIR156g precursor miRNA

Literature search

7 open access papers mention csi-MIR156g
(36 sentences)

Sequence

10471710 reads, 195379.0 reads per million, 16 experiments

auauggggugaggcauugucgaugaugcugUUGACGGAAGAUAGAGAGCACagaugaugaaaugcguggagcuugcaucucacuccuuuguGCUCUCUAUUCUUCUGUCAUCAucuucagccucucccuuuacauaacauau
....((((.(((((..((..(((((......(((((((((((((((((((((((.(((((.(((((.......))))).))).)).))))))))))))).)))))))))))))))..))))))).)))).............

Structure

---------auau    u     au  uc     ugcugU          -             u  -   a     ug 
             gggg gaggc  ug  gauga      UGACGGAAGA UAGAGAGCACaga ga uga augcg  g
             |||| |||||  ||  |||||      |||||||||| ||||||||||||| || ||| |||||  a
             uccc cuccg  ac  cuACU      ACUGUCUUCU AUCUCUCGuguuu cu acu uacgu  g
uauacaauacauu    u     --  uu     ------          U             c  c   c     uc 

Annotation confidence High

Genome context

chr6: 18413895-18414036 [-]

Mature csi-miR156g-5p

• Accession: MIMAT0048859
• Description: Citrus sinensis csi-miR156g-5p mature miRNA
• Sequence: 31 - UUGACGGAAGAUAGAGAGCAC - 51
• Evidence: experimental ; Illumina [1]

Mature csi-miR156g-3p

• Accession: MIMAT0048860
• Description: Citrus sinensis csi-miR156g-3p mature miRNA
• Sequence: 92 - GCUCUCUAUUCUUCUGUCAUCA - 113
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 28054378
   MicroRNA annotation of plant genomes - Do it right or not at all
   "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
   Bioessays (2017) 39:1600113