Stem-loop csi-MIR482g

Accession

MI0039700

Description

Citrus sinensis csi-MIR482g precursor miRNA

Literature search

4 open access papers mention csi-MIR482g
(6 sentences)

Sequence

aggaaguuuugggAGUGGGAGCGUGGGGUAAGAAGugaagaaaacguauaauuuuucuuuucuuuuucaauugagaaagaaaauuacaaauucaauuUCUUCCCUAUGCCUCCCAUUCCuaugauuucc
.(((((((.(((((((((((((((((((.(((((((((((((((........)))))(((((((((((....))))))))))).......))).)))))))))))))).)))))))))))).)))))))

Structure

a       u            -       U       -   gaaaacguauaauuuuuc           a 
 ggaaguu ugggAGUGGGAG CGUGGGG AAGAAGu gaa                  uuuucuuuuuc a
 ||||||| |||||||||||| ||||||| ||||||| |||                  |||||||||||  
 ccuuuag auCCUUACCCUC GUAUCCC UUCUuua cuu                  aaaagaaagag u
-       u            C       -       a   -----------aaacauu           u 

Annotation confidence Not enough data

Genome context

chr2: 9942925-9943053 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from csi-MIR482g

Mature csi-miR482g-5p

• Accession: MIMAT0048987
• Description: Citrus sinensis csi-miR482g-5p mature miRNA
• Sequence: 14 - AGUGGGAGCGUGGGGUAAGAAG - 35
• Evidence: experimental ; Illumina [1]

Mature csi-miR482g-3p

• Accession: MIMAT0048988
• Description: Citrus sinensis csi-miR482g-3p mature miRNA
• Sequence: 98 - UCUUCCCUAUGCCUCCCAUUCC - 119
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 28054378
   MicroRNA annotation of plant genomes - Do it right or not at all
   "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
   Bioessays (2017) 39:1600113