Stem-loop csi-MIR393c

Accession

MI0039661

Description

Citrus sinensis csi-MIR393c precursor miRNA

Literature search

2 open access papers mention csi-MIR393c
(9 sentences)

Sequence

gguuucuugcuucugcaacuagaggauaaaUCCAAAGGGAUCGCAUUGAUCcuaagccuuaauuauaauucucauacuuaauguucaugaggAUCAUGCUAUCCCUUUGGAUUccuccuucgguagcucauauauaaucucua
..............((.(((.(((((..(((((((((((((.((((.((((((..((.((((.(((.......))).)))).)).....)))))))))).)))))))))))))..))))).))).))................

Structure

--gguuucuugcuucu  a   a     ua             C    U      ---aa  c    u   aa 
                gc acu gagga  aaUCCAAAGGGAU GCAU GAUCcu     gc uuaa uau  u
                || ||| |||||  ||||||||||||| |||| ||||||     || |||| |||  u
                cg ugg uuccu  UUAGGUUUCCCUA CGUA CUAgga     ug aauu aua  c
aucucuaauauauacu  a   c     cc             U    -      guacu  u    c   cu 

Annotation confidence Not enough data

Genome context

chr7: 31959511-31959653 [+]

Mature csi-miR393c-5p

• Accession: MIMAT0048921
• Description: Citrus sinensis csi-miR393c-5p mature miRNA
• Sequence: 31 - UCCAAAGGGAUCGCAUUGAUC - 51
• Evidence: experimental ; Illumina [1]

Mature csi-miR393c-3p

• Accession: MIMAT0048922
• Description: Citrus sinensis csi-miR393c-3p mature miRNA
• Sequence: 93 - AUCAUGCUAUCCCUUUGGAUU - 113
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 28054378
   MicroRNA annotation of plant genomes - Do it right or not at all
   "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
   Bioessays (2017) 39:1600113