Stem-loop csi-MIR12107

Accession

MI0039690

Description

Citrus sinensis csi-MIR12107 precursor miRNA

Sequence

caaguaaaauuuauuuugagaguguuuuuaCUGAUGAGAGAGCGAAUGAUAaaccuuaaaucuuucucaauuuauaaacaauugggagauuccaaaaaaaaucaaauuuaUCAUUCGCGCUCUCAUCAUUAugaacgccuucaaauccugauuucaaauaa
......(((((...((((((.((((((.((.(((((((((.((((((((((((...........((((((((.......))))))))((((........))))...)))))))))))).))))))))).)).)))))).))))))....))))).......

Structure

-caagua     -uau      a      u  C         A            --------ccuuaaaucuu        ua 
       aaauu    uuugag guguuu ua UGAUGAGAG GCGAAUGAUAaa                   ucucaauu  u
       |||||    |||||| |||||| || ||||||||| ||||||||||||                   ||||||||  a
       uuuag    aaacuu cgcaag AU ACUACUCUC CGCUUACUauuu                   aggguuaa  a
aauaaac     uccu      c      u  U         G            aaacuaaaaaaaaccuuag        ca 

Annotation confidence Not enough data

Genome context

chr4: 1005818-1005978 [+]

Mature csi-miR12107-5p

• Accession: MIMAT0048971
• Description: Citrus sinensis csi-miR12107-5p mature miRNA
• Sequence: 31 - CUGAUGAGAGAGCGAAUGAUA - 51
• Evidence: experimental ; Illumina [1]

Mature csi-miR12107-3p

• Accession: MIMAT0048972
• Description: Citrus sinensis csi-miR12107-3p mature miRNA
• Sequence: 111 - UCAUUCGCGCUCUCAUCAUUA - 131
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 28054378
   MicroRNA annotation of plant genomes - Do it right or not at all
   "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
   Bioessays (2017) 39:1600113