miRBase entry: csi-MIR172b

Stem-loop csi-MIR172b


Accession
MI0039657
Description
Citrus sinensis csi-MIR172b precursor miRNA

Literature search
5 open access papers mention csi-MIR172b
(15 sentences)

Sequence

augaugaacaaacagucaucguuugcagauGCAGCAUCAUCAAGAUUCACAuguauauauauauauauauauauauauauagauauagauauaugcuaaugguggaaagauguuuaucuuuuugcuuuauugccuucaugAGAAUCUUGAUGAUGCUGCAUcagcgauaaaugacuaaucauauauaucua
.............((((((...((((.(((((((((((((((((((((.((((((((((((((((....)))))))))))).............((....(((((((((((....))))))))))).....))...)))).))))))))))))))))))))).))))...))))))...............

Structure
--augaugaacaaac      cgu    a                     A    uauauauauauauauauauauauauauagauauagauauau  -uaau           g 
               agucau   uugc gauGCAGCAUCAUCAAGAUUC CAug                                         gc     gguggaaagau u
               ||||||   |||| ||||||||||||||||||||| ||||                                         ||     |||||||||||  
               ucagua   agcg cUACGUCGUAGUAGUUCUAAG guac                                         cg     ucguuuuucua u
aucuauauauacuaa      aau    a                     A    --------------------------------------uuc  uuauu           u 


Annotation confidence Not enough data
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Genome context
chr7: 24627515-24627705 [+]

Database links

Mature csi-miR172b-5p

Accession MIMAT0048915
Description Citrus sinensis csi-miR172b-5p mature miRNA
Sequence 31 - GCAGCAUCAUCAAGAUUCACA - 51
Evidence experimental
Illumina [1]

Mature csi-miR172b-3p

Accession MIMAT0048916
Description Citrus sinensis csi-miR172b-3p mature miRNA
Sequence 141 - AGAAUCUUGAUGAUGCUGCAU - 161
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 28054378
    MicroRNA annotation of plant genomes - Do it right or not at all
    "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
    Bioessays (2017) 39:1600113