Stem-loop csi-MIR159c

Accession

MI0039622

Description

Citrus sinensis csi-MIR159c precursor miRNA

Literature search

5 open access papers mention csi-MIR159c
(28 sentences)

Sequence

auuaagcuggGAGCUUUCUUCGGUCCACUUauggguggcaauaggauuuaauuagcugcugacucauucauccaaauacugaguaaagggucgaaauggauacccaguaaaugagugaaugaugcgggagacaaauugaaucuuaagcuuccugugCUUGGACUGAAGGGAGCUCCCauugcucgcuaa
....(((((((((((((((((((((((..((((((.(((..((((((((((((.(((.(((..((((((((.((..(((((.((.....(((......))))).)))))..)).))))))))..))).)).).)))))))))))).))).))))))..))))))))))))))))))))..)))......

Structure

--auua   --                    CU      u   aa            a -  g   ac        c  aa     a  aaagg   ga 
      agc  uggGAGCUUUCUUCGGUCCA  Uauggg ggc  uaggauuuaauu g cu cug  ucauucau ca  uacug gu     guc  a
      |||  ||||||||||||||||||||  |||||| |||  |||||||||||| | || |||  |||||||| ||  ||||| ||     |||   
      ucg  aCCCUCGAGGGAAGUCAGGU  gugucc ucg  auucuaaguuaa c ga ggc  aguaagug gu  augac ca     uag  a
aaucgc   uu                    UC      u   -a            a a  g   gu        a  aa     c  -----   gu 

Annotation confidence Not enough data

Genome context

chr5: 1270908-1271096 [+]

Mature csi-miR159c-5p

• Accession: MIMAT0048862
• Description: Citrus sinensis csi-miR159c-5p mature miRNA
• Sequence: 11 - GAGCUUUCUUCGGUCCACUU - 30
• Evidence: experimental ; Illumina [1]

Mature csi-miR159c-3p

• Accession: MIMAT0048863
• Description: Citrus sinensis csi-miR159c-3p mature miRNA
• Sequence: 157 - CUUGGACUGAAGGGAGCUCCC - 177
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 28054378
   MicroRNA annotation of plant genomes - Do it right or not at all
   "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
   Bioessays (2017) 39:1600113