Stem-loop csi-MIR169m

Accession

MI0039648

Description

Citrus sinensis csi-MIR169m precursor miRNA

Literature search

5 open access papers mention csi-MIR169m
(12 sentences)

Sequence

5724 reads, 103.0 reads per million, 16 experiments

ugcgugcaggcgcagauauauaguagcgugCAGCCAAGGAUGACUUGCCGGcagaaugcuguguuuccagcucuccuuggauauguucagaaacauauauauuguaaugaaugaauuggugcaaguuGGCAAGUUGUCCUUGGCUACAUguuucuuucugcuccguaugccaggccu
.((((((.((.(((((.....((.((((((.(((((((((((((((((((((.((..((((......))))..)).....(((((((....)))))))...(((((.(.((....)).))))))))))))))))))))))))))).)))))).)).))))).)))))))).......

Structure

------u      a  c     uauau  u      C                     agaaugcuguguuuccagcucuccuuggauauguucagaaacauauaua     a g  u 
       gcgugc gg gcaga     ag agcgug AGCCAAGGAUGACUUGCCGGc                                                 uugua u aa g
       |||||| || |||||     || |||||| |||||||||||||||||||||                                                 ||||| | ||  
       cguaug cc cgucu     uc uugUAC UCGGUUCCUGUUGAACGGuug                                                 aacgu g uu a
uccggac      -  u     ----u  u      A                     -------------------------------------------------     - g  a 

Annotation confidence High

Genome context

chr9: 1732704-1732880 [+]

Mature csi-miR169m-5p

• Accession: MIMAT0048903
• Description: Citrus sinensis csi-miR169m-5p mature miRNA
• Sequence: 31 - CAGCCAAGGAUGACUUGCCGG - 51
• Evidence: experimental ; Illumina [1]

Mature csi-miR169m-3p

• Accession: MIMAT0057183
• Description: Citrus sinensis csi-miR169m-3p mature miRNA
• Sequence: 128 - GGCAAGUUGUCCUUGGCUACAU - 149
• Evidence: experimental ; unknown

References

1. PubMed ID: 28054378
   MicroRNA annotation of plant genomes - Do it right or not at all
   "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
   Bioessays (2017) 39:1600113