Stem-loop csi-MIR166j

Accession

MI0039633

Description

Citrus sinensis csi-MIR166j precursor miRNA

Literature search

7 open access papers mention csi-MIR166j
(13 sentences)

Sequence

42858 reads, 890.0 reads per million, 16 experiments

guguuggaguugagaGGAAUGGCGGCUGGUUCAAAGcuucaaaagaaaguuucuuaagaaauaagaaacaaguaugaaucuuucucucuaaagauagcuUUGGACCAGGCUUCAUUCCUCUCaaaauuaaaca
.((((....(((((((((((((.(.(((((((((((((..........((((((((.....))))))))........((((((......))))))))))))))))))).).))))))))))))).....))))

Structure

g    -ggag             C G             ----------------ucaaaagaaa        a 
 uguu     uugagaGGAAUGG G CUGGUUCAAAGcu                          guuucuua g
 ||||     ||||||||||||| | |||||||||||||                          |||||||| a
 acaa     aaCUCUCCUUACU C GACCAGGUUucga                          caaagaau a
-    auuaa             U G             uagaaaucucucuuucuaaguaugaa        a 

Annotation confidence High

Genome context

JH999128.1: 425836-425968 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from csi-MIR166j

Mature csi-miR166j-5p

• Accession: MIMAT0057178
• Description: Citrus sinensis csi-miR166j-5p mature miRNA
• Sequence: 16 - GGAAUGGCGGCUGGUUCAAAG - 36
• Evidence: experimental ; unknown

Mature csi-miR166j-3p

• Accession: MIMAT0048882
• Description: Citrus sinensis csi-miR166j-3p mature miRNA
• Sequence: 100 - UUGGACCAGGCUUCAUUCCUCUC - 122
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 28054378
   MicroRNA annotation of plant genomes - Do it right or not at all
   "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
   Bioessays (2017) 39:1600113