Stem-loop csi-MIR477e

Accession

MI0039673

Description

Citrus sinensis csi-MIR477e precursor miRNA

Literature search

1 open access papers mention csi-MIR477e
(3 sentences)

Sequence

15207 reads, 1778.0 reads per million, 16 experiments

auugcucACUCUCCCUCAAGGGCUUCUGAAcuggccuuguucaccuucaauuaaaggccuagacUGAGGUUCUUGGGGAGAGUAGAuaauguu
((((((.((((((((.((((((((((......((((((...............))))))......)))))))))))))))))))).))))...

Structure

---    -  c        U          UGAAcu      guucac 
   auug cu ACUCUCCC CAAGGGCUUC      ggccuu      c
   |||| || |||||||| ||||||||||      ||||||      u
   uaau GA UGAGAGGG GUUCUUGGAG      ccggaa      u
uug    A  -        -          Ucagau      auuaac 

Annotation confidence High

Genome context

chr5: 1063882-1063974 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from csi-MIR477e

Mature csi-miR477e-5p

• Accession: MIMAT0048941
• Description: Citrus sinensis csi-miR477e-5p mature miRNA
• Sequence: 8 - ACUCUCCCUCAAGGGCUUCUGAA - 30
• Evidence: experimental ; Illumina [1]

Mature csi-miR477e-3p

• Accession: MIMAT0048942
• Description: Citrus sinensis csi-miR477e-3p mature miRNA
• Sequence: 65 - UGAGGUUCUUGGGGAGAGUAGA - 86
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 28054378
   MicroRNA annotation of plant genomes - Do it right or not at all
   "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
   Bioessays (2017) 39:1600113