Stem-loop csi-MIR169g

Accession

MI0039642

Description

Citrus sinensis csi-MIR169g precursor miRNA

Literature search

5 open access papers mention csi-MIR169g
(12 sentences)

Sequence

5529 reads, 101.0 reads per million, 16 experiments

ucuugcauguggagaugaaaugaugcggugCAGCCAAGGAUGACUUGCCGGcaagccccuuuccuagaaccuaagcaucauauuuuuagauggcuucacaauuaugagucuuuugacuugggguuugauuuuauagcuucacuuguaggguuaauCGGCAAGUUGUCUUUGGCUACAccucugccucauguucacauguuagaccu
(((.(((((((((.((((......(.((((.((((((((((((((((((((((((((((.............(((((((.((....))))).)))).........(((((....)))))))))))))(((((((((......)))))))))...)))))))))))))))))))).)))).)....)))).))))))))).)))...

Structure

---   u         g    aaugau c    C                    ---------------------------        ----------uuuccuagaaccu    -   a  u 
   ucu gcaugugga auga      g ggug AGCCAAGGAUGACUUGCCGG                           caagcccc                       aagc auc ua u
   ||| ||||||||| ||||      | |||| ||||||||||||||||||||                           ||||||||                       |||| ||| ||  
   aga uguacacuu uacu      c ccAC UCGGUUUCUGUUGAACGGCu                           guuugggg                       uucg uag au u
ucc   u         g    --ccgu u    A                    aauugggauguucacuucgauauuuua        uucaguuuucugaguauuaacac    g   -  u 

Annotation confidence High

Genome context

chr7: 1615803-1616008 [-]

Mature csi-miR169g-5p

• Accession: MIMAT0048896
• Description: Citrus sinensis csi-miR169g-5p mature miRNA
• Sequence: 31 - CAGCCAAGGAUGACUUGCCGG - 51
• Evidence: experimental ; Illumina [1]

Mature csi-miR169g-3p

• Accession: MIMAT0057181
• Description: Citrus sinensis csi-miR169g-3p mature miRNA
• Sequence: 156 - CGGCAAGUUGUCUUUGGCUACA - 177
• Evidence: experimental ; unknown

References

1. PubMed ID: 28054378
   MicroRNA annotation of plant genomes - Do it right or not at all
   "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
   Bioessays (2017) 39:1600113