Stem-loop csi-MIR159b

Accession

MI0039621

Description

Citrus sinensis csi-MIR159b precursor miRNA

Literature search

5 open access papers mention csi-MIR159b
(28 sentences)

Sequence

2745 reads, 101.0 reads per million, 16 experiments

aguccacucauggaugaggcaaggguuuggauuAGCUGCCGACUCAUUCAUUCAaacacaguagaaagaggagcauuuugguuauccuauugugaaugUGUGAAUGAAGCGGGAGAUAAuauucauccuuucuuuucugugcuuggacug
((((((..((((((.((((.((((((....((((.((.(((..((((((((.((..((((((((...((.((.((...)).)).))))))))))..)).))))))))..))).)).))))....)))))))))).))))))..)))))).

Structure

-      cu      u    c      uugg    G  G   AC        U  aa        aaa  g  g  u 
 agucca  caugga gagg aagggu    auuA CU CCG  UCAUUCAU CA  cacaguag   ga ga ca  
 ||||||  |||||| |||| ||||||    |||| || |||  |||||||| ||  ||||||||   || || || u
 ucaggu  gugucu uucu uuccua    uAAU GA GGC  AGUAAGUG gu  guguuauc   cu uu gu  
g      uc      u    -      cuua    A  G   GA        U  aa        ---  a  g  u 

Annotation confidence High

Genome context

chr1: 9887739-9887888 [-]

Mature csi-miR159b-5p

• Accession: MIMAT0048861
• Description: Citrus sinensis csi-miR159b-5p mature miRNA
• Sequence: 34 - AGCUGCCGACUCAUUCAUUCA - 54
• Evidence: experimental ; Illumina [1]

Mature csi-miR159b-3p

• Accession: MIMAT0057176
• Description: Citrus sinensis csi-miR159b-3p mature miRNA
• Sequence: 99 - UGUGAAUGAAGCGGGAGAUAA - 119
• Evidence: experimental ; unknown

References

1. PubMed ID: 28054378
   MicroRNA annotation of plant genomes - Do it right or not at all
   "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
   Bioessays (2017) 39:1600113