Stem-loop csi-MIR156b

Accession

MI0039615

Description

Citrus sinensis csi-MIR156b precursor miRNA

Literature search

7 open access papers mention csi-MIR156b
(36 sentences)

Sequence

2218250 reads, 36861.0 reads per million, 16 experiments

uucucauucuaauucuuggaacauugaaauUGACAGAAGAGAGUGAGCACacagaggcaguuguauaauuguauacauguugcuuUUGCGUGCUCACUGCUCUUUCUGucagcuuccaguaccggaaucugacuuggcccucu
...(((.((..(((((.((.((...(((.(((((((((((((((((((((.(((((((((.((((((....))))))..))))))))).))))))))).))).))))))))).)))..)).)))))))..))..)))......

Structure

---uuc   -u  ua     u  a  auu   a         -   -         a         -u      a 
      uca  uc  auucu gg ac   gaa uUGACAGAA GAG AGUGAGCAC cagaggcag  uguaua u
      |||  ||  ||||| || ||   ||| ||||||||| ||| ||||||||| |||||||||  ||||||  
      ggu  ag  uaagg cc ug   cuu gacuGUCUU CUC UCACUCGUG GUUuucguu  acauau u
ucuccc   uc  uc     -  a  -ac   c         U   G         C         gu      g 

Annotation confidence Low

Genome context

chr7: 3637037-3637179 [+]

Mature csi-miR156b-5p

• Accession: MIMAT0048850
• Description: Citrus sinensis csi-miR156b-5p mature miRNA
• Sequence: 31 - UGACAGAAGAGAGUGAGCAC - 50
• Evidence: experimental ; Illumina [1]

Mature csi-miR156b-3p

• Accession: MIMAT0048851
• Description: Citrus sinensis csi-miR156b-3p mature miRNA
• Sequence: 86 - UUGCGUGCUCACUGCUCUUUCUG - 108
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 28054378
   MicroRNA annotation of plant genomes - Do it right or not at all
   "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
   Bioessays (2017) 39:1600113