Stem-loop csi-MIR399c

Accession

MI0016710

Description

Citrus sinensis csi-MIR399c precursor miRNA

Gene family

MIPF0000015; MIR399

Literature search

4 open access papers mention csi-MIR399c
(12 sentences)

Sequence

ucaauacaaagugacaaugugguugaggaauaacaGUGCAGUCCUCCUUUGGCGUGcagauugcaaagagauaaugcauauuauuucauucauuugcauccuucuguuUGCCAAAGGAGAAUUGCCCUGccauucacucucgcagcuag
.................(((((..(((((((..(((.(((((.(((((((((((.(((((.((((((((((((((....)))))))).....))))))....))))).))))))))))).))))).)))..)))).)))))))).....

Structure

ucaauacaaagugacaa     uu   -    aa   U     C           U     ---u      -----        g 
                 ugugg  gag gaau  caG GCAGU CUCCUUUGGCG Gcaga    ugcaaa     gagauaau c
                 |||||  ||| ||||  ||| ||||| ||||||||||| |||||    ||||||     ||||||||  
                 acgcu  cuc cuua  GUC CGUUA GAGGAAACCGU ugucu    acguuu     cuuuauua a
------------gaucg     --   a    cc   C     A           u     uccu      acuua        u 

Annotation confidence Not enough data

Genome context

chr2: 2303898-2304046 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from csi-MIR399c

Mature csi-miR399c-3p

• Accession: MIMAT0018467
• Description: Citrus sinensis csi-miR399c-3p mature miRNA
• Sequence: 109 - UGCCAAAGGAGAAUUGCCCUG - 129
• Evidence: experimental ; Illumina [1-2]

Mature csi-miR399c-5p

• Accession: MIMAT0037401
• Description: Citrus sinensis csi-miR399c-5p mature miRNA
• Sequence: 36 - GUGCAGUCCUCCUUUGGCGUG - 56
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 20398412
   Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type
   Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X
   BMC Genomics (2010) 11:246


2. PubMed ID: 28054378
   MicroRNA annotation of plant genomes - Do it right or not at all
   "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
   Bioessays (2017) 39:1600113