Stem-loop csi-MIR477b

Accession

MI0016719

Description

Citrus sinensis csi-MIR477b precursor miRNA

Literature search

1 open access papers mention csi-MIR477b
(3 sentences)

Sequence

17517 reads, 1602.0 reads per million, 16 experiments

caaaagcaaucgucguucACUCUCCCUCAAGGGCUUCUCUucgauccauauauaacguacauaugcucaaaugaguggugauggaucgacgcugaagcccUUAGGGCAGAGUGAUCGACUccggcuuucucauuuucc
..(((((....((((.(((((((((((.(((((((((.(.(((((((((..........(((..((((....)))).)))))))))))).)..))))))))))))).))))))).))))....)))))..........

Structure

--------ca     aauc    u       -    C         -U U         auauaacgua   au    a 
          aaagc    gucg ucACUCU CCCU AAGGGCUUC  C ucgauccau          cau  gcuc a
          |||||    |||| ||||||| |||| |||||||||  | |||||||||          |||  ||||  
          uuucg    CAGC AGUGAGA GGGA UUcccgaag  g agcuaggua          gug  ugag a
ccuuuuacuc     gccU    U       C    -         uc c         ----------   -g    u 

Annotation confidence Medium

Genome context

chr7: 9419304-9419441 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from csi-MIR477b

Mature csi-miR477b-5p

• Accession: MIMAT0018476
• Description: Citrus sinensis csi-miR477b-5p mature miRNA
• Sequence: 19 - ACUCUCCCUCAAGGGCUUCUCU - 40
• Evidence: experimental ; Illumina [1-2]

Mature csi-miR477b-3p

• Accession: MIMAT0037410
• Description: Citrus sinensis csi-miR477b-3p mature miRNA
• Sequence: 101 - UUAGGGCAGAGUGAUCGACU - 120
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 20398412
   Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type
   Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X
   BMC Genomics (2010) 11:246


2. PubMed ID: 28054378
   MicroRNA annotation of plant genomes - Do it right or not at all
   "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
   Bioessays (2017) 39:1600113