Stem-loop csi-MIR399d

Accession

MI0016711

Description

Citrus sinensis csi-MIR399d precursor miRNA

Literature search

4 open access papers mention csi-MIR399d
(12 sentences)

Sequence

935 reads, 38.0 reads per million, 16 experiments

aaagcaguuuuaGGGCACCUCUUACUUGGCAUGcaauggugauuuauuggugcaauaaucagcauuauauugguuaauucgauaucaaucccacugauaUGCCAAAGGAGAGUUGCCCUgugacugcuuc
.((((((((.(((((((.(((((..((((((((((.(((.((((....(((((........)))))(((((((.....))))))).))))))).)).))))))))..))))).))))))).)))))))).

Structure

a        u       C     AC        -  a   u    uauuggugcaauaaucagcauu       u 
 aagcaguu uaGGGCA CUCUU  UUGGCAUG ca ugg gauu                      auauugg u
 |||||||| ||||||| |||||  |||||||| || ||| ||||                      ||||||| a
 uucgucag gUCCCGU GAGAG  AACCGUau gu acc cuaa                      uauagcu a
c        u       U     GA        a  c   -    ---------------------c       u 

Annotation confidence High

Genome context

chr9: 15383353-15383482 [+]

Mature csi-miR399d-5p

• Accession: MIMAT0037402
• Description: Citrus sinensis csi-miR399d-5p mature miRNA
• Sequence: 13 - GGGCACCUCUUACUUGGCAUG - 33
• Evidence: experimental ; Illumina [2]

Mature csi-miR399d-3p

• Accession: MIMAT0018468
• Description: Citrus sinensis csi-miR399d-3p mature miRNA
• Sequence: 100 - UGCCAAAGGAGAGUUGCCCU - 119
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 20398412
   Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type
   Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X
   BMC Genomics (2010) 11:246


2. PubMed ID: 28054378
   MicroRNA annotation of plant genomes - Do it right or not at all
   "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
   Bioessays (2017) 39:1600113