Stem-loop csi-MIR393a

Accession

MI0016703

Description

Citrus sinensis csi-MIR393a precursor miRNA

Literature search

2 open access papers mention csi-MIR393a
(10 sentences)

Sequence

1104 reads, 77.0 reads per million, 16 experiments

uucugcaacuagaggauaaAUCCAAAGGGAUCGCAUUGAUCcuaagccuuaauuauaauucccauacuuaauauucauuAGGACGAUGCUAUCCCUCUGGAUUccuccuucgguagcucauauguauauauauaaucucuacaua
....((.(((.(((((..((((((.((((((.((((((.((((((......((((.............)))).....)))))))))))).)))))).))))))..))))).))).))...((((((.............))))))

Structure

------------------------uucu  a   a     ua      A      C      A      gccuua    uaauu 
                            gc acu gagga  aAUCCA AGGGAU GCAUUG UCcuaa      auua     c
                            || ||| |||||  |||||| |||||| |||||| ||||||      ||||     c
                            cg ugg uuccu  UUAGGU UCCCUA CGUAGC AGGAuu      uaau     c
auacaucucuaauauauauauguauacu  a   c     cc      C      U      -      -acuua    ucaua 

Annotation confidence High

Genome context

chr2: 28763391-28763535 [-]

Mature csi-miR393a-5p

• Accession: MIMAT0018460
• Description: Citrus sinensis csi-miR393a-5p mature miRNA
• Sequence: 20 - AUCCAAAGGGAUCGCAUUGAUC - 41
• Evidence: experimental ; Illumina [1-2]

Mature csi-miR393a-3p

• Accession: MIMAT0057169
• Description: Citrus sinensis csi-miR393a-3p mature miRNA
• Sequence: 80 - AGGACGAUGCUAUCCCUCUGGAUU - 103
• Evidence: experimental ; unknown

References

1. PubMed ID: 20398412
   Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type
   Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X
   BMC Genomics (2010) 11:246


2. PubMed ID: 28054378
   MicroRNA annotation of plant genomes - Do it right or not at all
   "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
   Bioessays (2017) 39:1600113