Stem-loop csi-MIR156c

Accession

MI0039616

Description

Citrus sinensis csi-MIR156c precursor miRNA

Literature search

7 open access papers mention csi-MIR156c
(37 sentences)

Sequence

uuaauuaauuguaaaaaggguaagaggaggUGACAGAAGAGAGUGAGCACacaugguauuuucuugcaugcuuugagauccugcuugaagcgaugcguGCUCACUCUCUAUCUGUCACCccaacccccccgccccccaaaaaucucccu
.................((((....((.((((((((((((((((((((((.(((.(((......)))..((((((((......)))))))).))).))))))))))))).))))))))))).)))).......................

Structure

------uuaauuaauuguaaaaa    aaga  a         -             a   gguauuuucuugcau        au 
                       gggu    gg ggUGACAGA AGAGAGUGAGCAC cau               gcuuugag  c
                       ||||    || ||||||||| ||||||||||||| |||               ||||||||   
                       ccca    cc CCACUGUCU UCUCUCACUCGug gua               cgaaguuc  c
ucccucuaaaaaccccccgcccc    ---a  -         A             c   --------------g        gu 

Annotation confidence Not enough data

Genome context

chr4: 3430774-3430922 [-]

Mature csi-miR156c-5p

• Accession: MIMAT0048852
• Description: Citrus sinensis csi-miR156c-5p mature miRNA
• Sequence: 31 - UGACAGAAGAGAGUGAGCAC - 50
• Evidence: experimental ; Illumina [1]

Mature csi-miR156c-3p

• Accession: MIMAT0048853
• Description: Citrus sinensis csi-miR156c-3p mature miRNA
• Sequence: 99 - GCUCACUCUCUAUCUGUCACC - 119
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 28054378
   MicroRNA annotation of plant genomes - Do it right or not at all
   "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
   Bioessays (2017) 39:1600113