Stem-loop csi-MIR482b

Accession

MI0016723

Description

Citrus sinensis csi-MIR482b precursor miRNA

Literature search

4 open access papers mention csi-MIR482b
(7 sentences)

Sequence

aggaaauuucuggAAUGGGAGGCUUGGCAAGAAGcgaucuauuuuucuuguucaauaaaaaagaaaaagaaaauuuuUCUUGCCCACCCCUCCCAUUCCuuggauuucc
.((((((((..(((((((((((...(((((((((.......((((((((...........)))))))).......)))))))))....)))))))))))..))))))))

Structure

a        cu           -CUU         cgaucua        guuc 
 ggaaauuu  ggAAUGGGAGG    GGCAAGAAG       uuuuucuu    a
 ||||||||  |||||||||||    |||||||||       ||||||||    a
 ccuuuagg  CCUUACCCUCC    CCGUUCUuu       aaaaagaa    u
-        uu           CCAC         uuaaaag        aaaa 

Annotation confidence Not enough data

Genome context

chr2: 9932506-9932614 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from csi-MIR482b

Mature csi-miR482b-3p

• Accession: MIMAT0018481
• Description: Citrus sinensis csi-miR482b-3p mature miRNA
• Sequence: 78 - UCUUGCCCACCCCUCCCAUUCC - 99
• Evidence: experimental ; Illumina [1-2]

Mature csi-miR482b-5p

• Accession: MIMAT0037411
• Description: Citrus sinensis csi-miR482b-5p mature miRNA
• Sequence: 14 - AAUGGGAGGCUUGGCAAGAAG - 34
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 20398412
   Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type
   Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X
   BMC Genomics (2010) 11:246


2. PubMed ID: 28054378
   MicroRNA annotation of plant genomes - Do it right or not at all
   "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
   Bioessays (2017) 39:1600113