Stem-loop csi-MIR390a

Accession

MI0013317

Description

Citrus sinensis csi-MIR390a precursor miRNA

Literature search

2 open access papers mention csi-MIR390a
(10 sentences)

Sequence

aaaguaaagaagaaucuguuAAGCUCAGGAGGGAUAGCGCCaugggugccaugaauaugggaaugaucuaggguuucaugauaaauaaugggcacuggCGCUAUCCAUCCUGAGUUUCAuggcuucuucuuacucucucucucucgagaucggcuc
..(((((.((((((.((((.((((((((((.(((((((((((...(((((............((((.........))))...........)))))))))))))))).)))))))))).)))).))))))))))).((((......)))).......

Structure

--------------------aa     a      u    u          G           ugg     augaauauggga    ucu 
                      aguaa gaagaa cugu AAGCUCAGGA GGAUAGCGCCa   gugcc            auga   a
                      ||||| |||||| |||| |||||||||| |||||||||||   |||||            ||||   g
                      ucauu cuucuu gguA UUUGAGUCCU CCUAUCGCggu   cacgg            uacu   g
cucggcuagagcucucucucuc     -      c    C          A           ---     -guaauaaauag    uug 

Annotation confidence Not enough data

Genome context

chr6: 11038360-11038515 [+]

Mature csi-miR390a-5p

• Accession: MIMAT0014092
• Description: Citrus sinensis csi-miR390a-5p mature miRNA
• Sequence: 21 - AAGCUCAGGAGGGAUAGCGCC - 41
• Evidence: experimental ; Illumina [2-3]

Mature csi-miR390a-3p

• Accession: MIMAT0037374
• Description: Citrus sinensis csi-miR390a-3p mature miRNA
• Sequence: 99 - CGCUAUCCAUCCUGAGUUUCA - 119
• Evidence: experimental ; Illumina [3]

References

1. PubMed ID: 19585144
   Identification and characterization of 27 conserved microRNAs in citrus
   "Song C, Fang J, Li X, Liu H, Thomas Chao C"
   "Planta (2009) 230:671-685


2. PubMed ID: 20398412
   Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type
   Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X
   BMC Genomics (2010) 11:246


3. PubMed ID: 28054378
   MicroRNA annotation of plant genomes - Do it right or not at all
   "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
   Bioessays (2017) 39:1600113