Stem-loop csi-MIR171i

Accession

MI0039656

Description

Citrus sinensis csi-MIR171i precursor miRNA

Literature search

3 open access papers mention csi-MIR171i
(3 sentences)

Sequence

887 reads, 70.0 reads per million, 16 experiments

aaagcauacgAGAUAUUGGUGCGGUUCAAUCUgagagcagugcucaaagacuaagaagagcccuguuauuUGAUUGAGCCGUGCCAAUAUCAcgucacgugca
...(((((((.((((((((((((((((((((....(((((.((((............)))).)))))....)))))))))))))))))))).)))...)))).

Structure

aaa    ---   A                    Ugag     u    aaaga 
   gcau   acg GAUAUUGGUGCGGUUCAAUC    agcag gcuc     c
   ||||   ||| ||||||||||||||||||||    ||||| ||||      
   cgug   ugc CUAUAACCGUGCCGAGUUAG    uuguc cgag     u
--a    cac   A                    Uuua     c    aagaa 

Annotation confidence High

Genome context

chr2: 1312646-1312748 [+]

Mature csi-miR171i-5p

• Accession: MIMAT0057186
• Description: Citrus sinensis csi-miR171i-5p mature miRNA
• Sequence: 11 - AGAUAUUGGUGCGGUUCAAUCU - 32
• Evidence: experimental ; unknown

Mature csi-miR171i-3p

• Accession: MIMAT0048914
• Description: Citrus sinensis csi-miR171i-3p mature miRNA
• Sequence: 71 - UGAUUGAGCCGUGCCAAUAUCA - 92
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 28054378
   MicroRNA annotation of plant genomes - Do it right or not at all
   "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
   Bioessays (2017) 39:1600113