Stem-loop csi-MIR164c

Accession

MI0039626

Description

Citrus sinensis csi-MIR164c precursor miRNA

Literature search

5 open access papers mention csi-MIR164c
(35 sentences)

Sequence

auacucauggcauggguggguagcucuuguUGGAGAAGCAGGGCACGUGCAauucacaugcguagaucauaugauaucuuacaagacuuugCACGCGCUCCCCUUCUCCAACacguguuucucgcccucaauucucucauuc
.............(((((((.(((.(.(((((((((((..((((.(((((((.............(((....))).............))))))).))))..))))))))))).).))).)))))))...............

Structure

--auacucauggcau       u   u u           CA    A       uucacaugcguag   a 
               ggguggg agc c uguUGGAGAAG  GGGC CGUGCAa             auc u
               ||||||| ||| | |||||||||||  |||| |||||||             |||  
               cccgcuc uug g aCAACCUCUUC  CUCG GCACguu             uag a
cuuacucucuuaacu       u   u c           CC    C       ucagaacauucua   u 

Annotation confidence Not enough data

Genome context

chr3: 18768832-18768973 [+]

Mature csi-miR164c-5p

• Accession: MIMAT0048870
• Description: Citrus sinensis csi-miR164c-5p mature miRNA
• Sequence: 31 - UGGAGAAGCAGGGCACGUGCA - 51
• Evidence: experimental ; Illumina [1]

Mature csi-miR164c-3p

• Accession: MIMAT0048871
• Description: Citrus sinensis csi-miR164c-3p mature miRNA
• Sequence: 92 - CACGCGCUCCCCUUCUCCAAC - 112
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 28054378
   MicroRNA annotation of plant genomes - Do it right or not at all
   "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
   Bioessays (2017) 39:1600113