Stem-loop csi-MIR171c

Accession

MI0039650

Description

Citrus sinensis csi-MIR171c precursor miRNA

Literature search

3 open access papers mention csi-MIR171c
(3 sentences)

Sequence

agcgguaaguguugaaauuuaaaacggagaUGUUGGAACGGCUCAAUCAAAucaaauauccuaugaaaucaauuggguccuuuaauuUGAUUGAGCCGUGCCAAUAUCuccucucgucuucuuucgcuucaucaacuu
...((((((((..(((.........(((((((((((.(((((((((((((((.(((...((((..........))))...))).))))))))))))))).))))))))))).......)))...))))).))).....

Structure

--agc   -     -uu   auuuaaaac           A               c   uau    ugaa 
     ggu aagug   gaa         ggagaUGUUGG ACGGCUCAAUCAAAu aaa   ccua    a
     ||| |||||   |||         ||||||||||| ||||||||||||||| |||   ||||     
     cua uucgc   cuu         ccuCUAUAACC UGCCGAGUUAGUuua uuu   gggu    u
uucaa   c     uuu   --cugcucu           G               a   ccu    uaac 

Annotation confidence Not enough data

Genome context

JH999147.1: 178217-178354 [+]

Mature csi-miR171c-5p

• Accession: MIMAT0048906
• Description: Citrus sinensis csi-miR171c-5p mature miRNA
• Sequence: 31 - UGUUGGAACGGCUCAAUCAAA - 51
• Evidence: experimental ; Illumina [1]

Mature csi-miR171c-3p

• Accession: MIMAT0048907
• Description: Citrus sinensis csi-miR171c-3p mature miRNA
• Sequence: 88 - UGAUUGAGCCGUGCCAAUAUC - 108
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 28054378
   MicroRNA annotation of plant genomes - Do it right or not at all
   "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
   Bioessays (2017) 39:1600113