Stem-loop csi-MIR390b

Accession

MI0039659

Description

Citrus sinensis csi-MIR390b precursor miRNA

Literature search

2 open access papers mention csi-MIR390b
(10 sentences)

Sequence

89468 reads, 1744.0 reads per million, 16 experiments

auuucguuugucaaguauggagaaucuguaAAGCUCAGGAGGGAUAGCGCCaugauaauauucuuuuuuaauuaauuaauuaauuccuugaucaauuagcggcgcuggCGCUAUCUAUCCUGAGUUUUCcggauucuucuugcuaguuuuggugcaguu
.............((((.((((((((((.(((((((((((.(((((((((((.((......))....((((((.(((((........))))).))))))......))))))))))).))))))))))).)))))))))).))))...............

Structure

--auuucguuuguca    u          u           G           ugauaauauucuuuu      a     uua 
               agua ggagaaucug aAAGCUCAGGA GGAUAGCGCCa               uuaauu auuaa   a
               |||| |||||||||| ||||||||||| |||||||||||               |||||| |||||    
               ucgu cuucuuaggc UUUUGAGUCCU UCUAUCGCggu               gauuaa uaguu   u
uugacgugguuuuga    u          C           A           ---------cgcggc      c     ccu 

Annotation confidence High

Genome context

chr8: 22527260-22527418 [+]

Mature csi-miR390b-5p

• Accession: MIMAT0048918
• Description: Citrus sinensis csi-miR390b-5p mature miRNA
• Sequence: 31 - AAGCUCAGGAGGGAUAGCGCC - 51
• Evidence: experimental ; Illumina [1]

Mature csi-miR390b-3p

• Accession: MIMAT0057188
• Description: Citrus sinensis csi-miR390b-3p mature miRNA
• Sequence: 109 - CGCUAUCUAUCCUGAGUUUUC - 129
• Evidence: experimental ; unknown

References

1. PubMed ID: 28054378
   MicroRNA annotation of plant genomes - Do it right or not at all
   "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
   Bioessays (2017) 39:1600113