Stem-loop csi-MIR535c

Accession

MI0039676

Description

Citrus sinensis csi-MIR535c precursor miRNA

Literature search

2 open access papers mention csi-MIR535c
(5 sentences)

Sequence

auccuugcccagacucgagacaacuuuguuUGACAAUGAGAGAGAGCACACccgucagcauucgugcaaauggcaaggcugucuacuagcGUGCUCUCUACCAUUGUCAUAcgauuugcuuaacgcaguugaauauucucu
................(((((((((((((.((((((((..(((((((((.(..((((((.....(((.....)))..))))...))..).)))))))))..)))))))).))))...((.....))))))).....)))).

Structure

auccuugcccagacuc    -----     ------------    u        AG         A cc  ---    auucg   a 
                gaga     caacu            uugu UGACAAUG  AGAGAGCAC C  gu   cagc     ugc a
                ||||     |||||            |||| ||||||||  ||||||||| |  ||   ||||     ||| a
                cucu     guuga            agcA ACUGUUAC  UCUCUCGUG g  ca   gucg     acg u
---------------u    uauaa     cgcaauucguuu    U        CA         c au  ucu    ---ga   g 

Annotation confidence Not enough data

Genome context

chr2: 14868303-14868443 [-]

Mature csi-miR535c-5p

• Accession: MIMAT0048947
• Description: Citrus sinensis csi-miR535c-5p mature miRNA
• Sequence: 31 - UGACAAUGAGAGAGAGCACAC - 51
• Evidence: experimental ; Illumina [1]

Mature csi-miR535c-3p

• Accession: MIMAT0048948
• Description: Citrus sinensis csi-miR535c-3p mature miRNA
• Sequence: 91 - GUGCUCUCUACCAUUGUCAUA - 111
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 28054378
   MicroRNA annotation of plant genomes - Do it right or not at all
   "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
   Bioessays (2017) 39:1600113