Stem-loop csi-MIR169o

Accession

MI0039705

Description

Citrus sinensis csi-MIR169o precursor miRNA

Literature search

5 open access papers mention csi-MIR169o
(12 sentences)

Sequence

5374 reads, 99.0 reads per million, 16 experiments

gugCAGCCAAGGAUGACUUGCCGGcggccggaacuagcaaaggcaauucaagugcccuuauuuuccgGCAAGUUUAUCCUUGGCUACAUugggcuc
(((.((((((((((((((((((((.((((.(((...((....))..)))..).)))........)))))))).)))))))))))).))).......

Structure

-------   C            -        -------c   - -g   cua  a 
       gug AGCCAAGGAUGA CUUGCCGG        ggc c  gaa   gc a
       ||| |||||||||||| ||||||||        ||| |  |||   ||  
       UAC UCGGUUCCUAUU GAACGgcc        ccg g  cuu   cg a
cucgggu   A            U        uuuuauuc   u aa   -aa  g 

Annotation confidence Medium

Genome context

chr7: 4557214-4557309 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from csi-MIR169o

Mature csi-miR169o-5p

• Accession: MIMAT0048995
• Description: Citrus sinensis csi-miR169o-5p mature miRNA
• Sequence: 4 - CAGCCAAGGAUGACUUGCCGG - 24
• Evidence: experimental ; Illumina [1]

Mature csi-miR169o-3p

• Accession: MIMAT0057193
• Description: Citrus sinensis csi-miR169o-3p mature miRNA
• Sequence: 68 - GCAAGUUUAUCCUUGGCUACAU - 89
• Evidence: experimental ; unknown

References

1. PubMed ID: 28054378
   MicroRNA annotation of plant genomes - Do it right or not at all
   "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
   Bioessays (2017) 39:1600113