Stem-loop csi-MIR156a

Accession

MI0016691

Description

Citrus sinensis csi-MIR156a precursor miRNA

Literature search

7 open access papers mention csi-MIR156a
(36 sentences)

Sequence

cgagagagcuacUGACAGAAGAGAGUGAGCACacgcagguaauuguauuagaaaauaucuuugcaggugcgUGCUCGCUCCUCUUCUGUCAGCgucauuuuug
((((((.(...(((((((((((((((((((((.(((..((((..(((((....)))))..))))..))).))))))))).))))))))))))...).))))))

Structure

      a cua            -         a   ag    uu     a 
cgagag g   cUGACAGAAGAG AGUGAGCAC cgc  guaa  guauu g
|||||| |   |||||||||||| ||||||||| |||  ||||  |||||  
guuuuu c   GACUGUCUUCUC UCGCUCGUg gug  cguu  uauaa a
      a ugC            C         c   ga    uc     a 

Annotation confidence Not enough data

Genome context

chr4: 392462-392564 [+]

Mature csi-miR156a-5p

• Accession: MIMAT0018448
• Description: Citrus sinensis csi-miR156a-5p mature miRNA
• Sequence: 13 - UGACAGAAGAGAGUGAGCAC - 32
• Evidence: experimental ; Illumina [1-2]

Mature csi-miR156a-3p

• Accession: MIMAT0037391
• Description: Citrus sinensis csi-miR156a-3p mature miRNA
• Sequence: 72 - UGCUCGCUCCUCUUCUGUCAGC - 93
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 20398412
   Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type
   Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X
   BMC Genomics (2010) 11:246


2. PubMed ID: 28054378
   MicroRNA annotation of plant genomes - Do it right or not at all
   "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
   Bioessays (2017) 39:1600113