miRBase entry: csi-MIR156a

Stem-loop csi-MIR156a


Accession
MI0016691
Description
Citrus sinensis csi-MIR156a precursor miRNA

Literature search
7 open access papers mention csi-MIR156a
(36 sentences)

Sequence

cgagagagcuacUGACAGAAGAGAGUGAGCACacgcagguaauuguauuagaaaauaucuuugcaggugcgUGCUCGCUCCUCUUCUGUCAGCgucauuuuug
((((((.(...(((((((((((((((((((((.(((..((((..(((((....)))))..))))..))).))))))))).))))))))))))...).))))))

Structure
      a cua            -         a   ag    uu     a 
cgagag g   cUGACAGAAGAG AGUGAGCAC cgc  guaa  guauu g
|||||| |   |||||||||||| ||||||||| |||  ||||  |||||  
guuuuu c   GACUGUCUUCUC UCGCUCGUg gug  cguu  uauaa a
      a ugC            C         c   ga    uc     a 


Annotation confidence Not enough data
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Genome context
chr4: 392462-392564 [+]

Database links

Mature csi-miR156a-5p

Accession MIMAT0018448
Description Citrus sinensis csi-miR156a-5p mature miRNA
Sequence 13 - UGACAGAAGAGAGUGAGCAC - 32
Evidence experimental
Illumina [1-2]

Mature csi-miR156a-3p

Accession MIMAT0037391
Description Citrus sinensis csi-miR156a-3p mature miRNA
Sequence 72 - UGCUCGCUCCUCUUCUGUCAGC - 93
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 20398412
    Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type
    Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X
    BMC Genomics (2010) 11:246

  2. PubMed ID: 28054378
    MicroRNA annotation of plant genomes - Do it right or not at all
    "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
    Bioessays (2017) 39:1600113