Stem-loop csi-MIR166k

Accession

MI0039634

Description

Citrus sinensis csi-MIR166k precursor miRNA

Literature search

7 open access papers mention csi-MIR166k
(12 sentences)

Sequence

76196 reads, 3026.0 reads per million, 16 experiments

gagaggguuagguuugagaGGAAUGUUGUCUGGUUCAAGAucauggaggaagaauaaauaucugaacccuaaaugauucUUGGACCAGGCUUCAUUCCACUCaaccaacuccucu
.((((((((.((((.(((.((((((..(((((((((((((((((..(((..................)))..)))).)))))))))))))..)))))).)))))))))).)))))

Structure

g     -   a    u   a      UU             -    gg   aagaauaa 
 agagg guu gguu gag GGAAUG  GUCUGGUUCAAGA ucau  agg        a
 ||||| ||| |||| ||| ||||||  ||||||||||||| ||||  |||         
 ucucc caa ccaa CUC CCUUAC  CGGACCAGGUUcu agua  ucc        u
-     u   -    -   A      UU             u    aa   caagucua 

Annotation confidence High

Genome context

JH999128.1: 426072-426186 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from csi-MIR166k

Mature csi-miR166k-5p

• Accession: MIMAT0057179
• Description: Citrus sinensis csi-miR166k-5p mature miRNA
• Sequence: 20 - GGAAUGUUGUCUGGUUCAAGA - 40
• Evidence: experimental ; unknown

Mature csi-miR166k-3p

• Accession: MIMAT0048883
• Description: Citrus sinensis csi-miR166k-3p mature miRNA
• Sequence: 80 - UUGGACCAGGCUUCAUUCCACUC - 102
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 28054378
   MicroRNA annotation of plant genomes - Do it right or not at all
   "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
   Bioessays (2017) 39:1600113