Stem-loop csi-MIR482d

Accession

MI0039674

Description

Citrus sinensis csi-MIR482d precursor miRNA

Literature search

4 open access papers mention csi-MIR482d
(6 sentences)

Sequence

agagggaguugaaggauauugggaagguuuUGGUAUGGGUGAGUAGGGAAGauaauuuaacuaaguaauaauaauaucacuuuuuucauuauuacuauuuacuuaaggaauuuguauaucuUCCCUACUCCACCCAUGCCAUAgguuucccauuauuccucccucuccuuauc
((((((((.....(((((.(((((((.((.((((((((((((((((((((((((((((...(((((((((.(((((.............))))).)).)))))))..)))).....))))))))))))).))))))))))).)).))))))).))))))))))))).......

Structure

-------        uugaa     u       g  u           -             -----    aac       -  a     ucacu 
       agagggag     ggaua ugggaag uu UGGUAUGGGUG AGUAGGGAAGaua     auuu   uaaguaa ua uaaua     u
       ||||||||     ||||| ||||||| || ||||||||||| |||||||||||||     ||||   ||||||| || |||||     u
       ucucccuc     cuuau acccuuu gA ACCGUACCCAC UCAUCCCUucuau     uaag   auucauu au auuau     u
cuauucc        -----     u       g  U           C             auguu    -ga       u  c     uacuu 

Annotation confidence Not enough data

Genome context

chr6: 1186417-1186589 [+]

Mature csi-miR482d-5p

• Accession: MIMAT0048943
• Description: Citrus sinensis csi-miR482d-5p mature miRNA
• Sequence: 31 - UGGUAUGGGUGAGUAGGGAAG - 51
• Evidence: experimental ; Illumina [1]

Mature csi-miR482d-3p

• Accession: MIMAT0048944
• Description: Citrus sinensis csi-miR482d-3p mature miRNA
• Sequence: 122 - UCCCUACUCCACCCAUGCCAUA - 143
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 28054378
   MicroRNA annotation of plant genomes - Do it right or not at all
   "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
   Bioessays (2017) 39:1600113