Stem-loop csi-MIR482c

Accession

MI0016737

Description

Citrus sinensis csi-MIR482c precursor miRNA

Literature search

5 open access papers mention csi-MIR482c
(8 sentences)

Sequence

uaaaauuuuuGGAAUUGGGUGCUAGGGAAGGuuuuguuugacuugucugucauaacuaaauuaauuUUCCCUAGUCCCCCUAUUCCUAugauuuuc
.((((((...(((((.(((.(((((((((((((..(((((((......)))).)))......))))))))))))).)))..)))))...)))))).

Structure

u      uuu     -U   U             ----uu   -    uu 
 aaaauu   GGAAU  GGG GCUAGGGAAGGuu      guu ugac  g
 ||||||   |||||  ||| |||||||||||||      ||| ||||   
 uuuuag   CCUUA  CCC UGAUCCCUUuuaa      caa acug  u
c      uAU     UC   C             uuaaau   u    uc 

Annotation confidence Not enough data

Genome context

chr2: 9927230-9927325 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from csi-MIR482c

Mature csi-miR482c-3p

• Accession: MIMAT0018495
• Description: Citrus sinensis csi-miR482c-3p mature miRNA
• Sequence: 67 - UUCCCUAGUCCCCCUAUUCCUA - 88
• Evidence: experimental ; Illumina [1-2]

Mature csi-miR482c-5p

• Accession: MIMAT0037416
• Description: Citrus sinensis csi-miR482c-5p mature miRNA
• Sequence: 11 - GGAAUUGGGUGCUAGGGAAGG - 31
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 20398412
   Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type
   Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X
   BMC Genomics (2010) 11:246


2. PubMed ID: 28054378
   MicroRNA annotation of plant genomes - Do it right or not at all
   "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
   Bioessays (2017) 39:1600113