Stem-loop csi-MIR169n

Accession

MI0039649

Description

Citrus sinensis csi-MIR169n precursor miRNA

Literature search

5 open access papers mention csi-MIR169n
(12 sentences)

Sequence

gacgCAGCCAAGGAUGACUUGCCGGagauguuuguacauuuucaauuucccGGCAAGUUGCCCUUGGCUACAuuggccu
.....((((((((.(((((((((((.((...(((........)))..))))))))))))).))))))))..........

Structure

-----gacgC        A           a  ugu   uac 
          AGCCAAGG UGACUUGCCGG ga   uug   a
          |||||||| ||||||||||| ||   |||    
          UCGGUUCC GUUGAACGGcc cu   aac   u
uccgguuACA        C           -  -uu   uuu 

Annotation confidence Not enough data

Genome context

chr7: 4557016-4557094 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from csi-MIR169n

Mature csi-miR169n-5p

• Accession: MIMAT0048904
• Description: Citrus sinensis csi-miR169n-5p mature miRNA
• Sequence: 5 - CAGCCAAGGAUGACUUGCCGG - 25
• Evidence: experimental ; Illumina [1]

Mature csi-miR169n-3p

• Accession: MIMAT0048905
• Description: Citrus sinensis csi-miR169n-3p mature miRNA
• Sequence: 52 - GGCAAGUUGCCCUUGGCUACA - 72
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 28054378
   MicroRNA annotation of plant genomes - Do it right or not at all
   "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
   Bioessays (2017) 39:1600113