Stem-loop csi-MIR156e

Accession

MI0039618

Description

Citrus sinensis csi-MIR156e precursor miRNA

Literature search

7 open access papers mention csi-MIR156e
(36 sentences)

Sequence

agugucagaggagggaaaugggugaugcugGUGACAGAAGAUAGAGAGCGCagaugaugauaugcucuaauggaguuuguauaucacuccuuuguGCUCUCUGUGCUUCUGUCAUCAggccaauucagucccuccccucacuuucuu
((((..((.(((((((..(((((....(((((((((((((((((((((((((((.((((((((((.............)))))))).)).)))))))))))))).)))))))))))))....))))).))))))).)))))).....

Structure

-----    uc  a       aa     gaug             -              u  -        ucuaa 
     agug  ag ggaggga  ugggu    cugGUGACAGAAG AUAGAGAGCGCaga ga ugauaugc     u
     ||||  || |||||||  |||||    ||||||||||||| |||||||||||||| || ||||||||     g
     ucac  uc ccucccu  acuua    gACUACUGUCUUC UGUCUCUCGuguuu cu acuauaug     g
uucuu    --  c       -g     accg             G              c  c        uuuga 

Annotation confidence Not enough data

Genome context

chr7: 24974743-24974889 [-]

Mature csi-miR156e-5p

• Accession: MIMAT0048855
• Description: Citrus sinensis csi-miR156e-5p mature miRNA
• Sequence: 31 - GUGACAGAAGAUAGAGAGCGC - 51
• Evidence: experimental ; Illumina [1]

Mature csi-miR156e-3p

• Accession: MIMAT0048856
• Description: Citrus sinensis csi-miR156e-3p mature miRNA
• Sequence: 96 - GCUCUCUGUGCUUCUGUCAUCA - 117
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 28054378
   MicroRNA annotation of plant genomes - Do it right or not at all
   "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
   Bioessays (2017) 39:1600113