Stem-loop csi-MIR3951b

Accession

MI0039712

Description

Citrus sinensis csi-MIR3951b precursor miRNA

Literature search

1 open access papers mention csi-MIR3951b
(3 sentences)

Sequence

cuuggcaCAGGUAAAGAUGAGAGAAAAAcaucagagaagagagaaauguggucccucucuauccacccacccauuagucucucguuucuuuucuucuuUUUCUCUUAUCUUUUAUCUGUGcuuagc
((.(((((((((((((((((((((((((....((((((((((((...((((...................))))...))))))..)))))).....))))))))))))).)))))))))))).)).

Structure

-  u            -             -cauc      --      aau    ucccucuc 
 cu ggcaCAGGUAAA GAUGAGAGAAAAA     agagaa  gagaga   gugg        u
 || |||||||||||| |||||||||||||     ||||||  ||||||   ||||        a
 ga ucGUGUCUAUUU CUAUUCUCUUUuu     uuucuu  cucucu   uacc        u
c  u            U             cuucu      ug      gau    cacccacc 

Annotation confidence Not enough data

Genome context

chr4: 7871758-7871883 [-]

Mature csi-miR3951b-5p

• Accession: MIMAT0049003
• Description: Citrus sinensis csi-miR3951b-5p mature miRNA
• Sequence: 8 - CAGGUAAAGAUGAGAGAAAAA - 28
• Evidence: experimental ; Illumina [1]

Mature csi-miR3951b-3p

• Accession: MIMAT0049004
• Description: Citrus sinensis csi-miR3951b-3p mature miRNA
• Sequence: 99 - UUUCUCUUAUCUUUUAUCUGUG - 120
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 28054378
   MicroRNA annotation of plant genomes - Do it right or not at all
   "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
   Bioessays (2017) 39:1600113