Stem-loop csi-MIR164d

Accession

MI0039704

Description

Citrus sinensis csi-MIR164d precursor miRNA

Literature search

5 open access papers mention csi-MIR164d
(35 sentences)

Sequence

181138 reads, 3463.0 reads per million, 16 experiments

uauuguucuauugggugaguagcuccuugcUGGAGAAGCAGGGCACGUGCAaacaccacuuuggcuccuuucgguuucagaauugccacuaaauccuuugCACGCGCUCCCCUUCUCCAACAuggguuccucaccuuuccugaucucucac
....(.((....(((((((.(((.((.((.((((((((..((((.((((((((........((((....(((.......)))..))))........)))))))).))))..)))))))).)).))))).))))))).....)).)......

Structure

--uauu u  -uauu       u   u  u  c        CA    A        caccacuu    uccu   gg 
      g uc     gggugag agc cc ug UGGAGAAG  GGGC CGUGCAaa        uggc    uuc  u
      | ||     ||||||| ||| || || ||||||||  |||| ||||||||        ||||    |||  u
      c ag     uccacuc uug gg AC ACCUCUUC  CUCG GCACguuu        accg    aag  u
cacucu u  uccuu       c   -  u  A        CC    C        ccuaaauc    --uu   ac 

Annotation confidence High

Genome context

chr5: 34323478-34323628 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from csi-MIR164d

Mature csi-miR164d-5p

• Accession: MIMAT0048993
• Description: Citrus sinensis csi-miR164d-5p mature miRNA
• Sequence: 31 - UGGAGAAGCAGGGCACGUGCA - 51
• Evidence: experimental ; Illumina [1]

Mature csi-miR164d-3p

• Accession: MIMAT0048994
• Description: Citrus sinensis csi-miR164d-3p mature miRNA
• Sequence: 101 - CACGCGCUCCCCUUCUCCAACA - 122
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 28054378
   MicroRNA annotation of plant genomes - Do it right or not at all
   "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
   Bioessays (2017) 39:1600113