Stem-loop csi-MIR167b

Accession

MI0016697

Description

Citrus sinensis csi-MIR167b precursor miRNA

Literature search

4 open access papers mention csi-MIR167b
(5 sentences)

Sequence

2746924 reads, 55205.0 reads per million, 16 experiments

aucgggcaccacuaucagaUGAAGCUGCCAGCAUGAUCUuaacuuuccuccuuugcucgaggaaugauacAGAUCAUGCGGCAGUUUCACCUguucguugguugcacgaaauuacgaguccag
.(((.(((((((...(((.((((((((((.(((((((((((.(.((((((........)))))).).)).))))))))))))))))))).)))...).))).))).)))..............

Structure

-------------a   g   -   - uau   a          A         -  a u      cuu 
              ucg gca cca c   cag UGAAGCUGCC GCAUGAUCU ua c uuccuc   u
              ||| ||| ||| |   ||| |||||||||| ||||||||| || | ||||||    
              agc cgu ggu g   gUC ACUUUGACGG CGUACUAGA au g aaggag   g
gaccugagcauuaa   a   u   u cuu   C          -         c  a u      cuc 

Annotation confidence High

Genome context

chr9: 4850348-4850470 [+]

Mature csi-miR167b-5p

• Accession: MIMAT0018454
• Description: Citrus sinensis csi-miR167b-5p mature miRNA
• Sequence: 20 - UGAAGCUGCCAGCAUGAUCU - 39
• Evidence: experimental ; Illumina [1-2]

Mature csi-miR167b-3p

• Accession: MIMAT0037395
• Description: Citrus sinensis csi-miR167b-3p mature miRNA
• Sequence: 71 - AGAUCAUGCGGCAGUUUCACCU - 92
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 20398412
   Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type
   Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X
   BMC Genomics (2010) 11:246


2. PubMed ID: 28054378
   MicroRNA annotation of plant genomes - Do it right or not at all
   "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
   Bioessays (2017) 39:1600113