Stem-loop csi-MIR169h

Accession

MI0039643

Description

Citrus sinensis csi-MIR169h precursor miRNA

Literature search

5 open access papers mention csi-MIR169h
(12 sentences)

Sequence

658 reads, 22.0 reads per million, 15 experiments

gucuugcaugaauauaauagcauuguuugcUAGCCAAGGAUGACUUGCCUGcgccuugauugcaagacgaggguuucaaguggcuggaagccucucuuguuugguugccaggcggucuccuuggcuaagcUGACAGGCUCUUAUCUUUCAUGcuaggccuuc
((((.(((((((.((((.(((.(((((.((((((((((((.((((.(((((.((.......((((((.((((.(((((......))))).))))))))))......)))))))))))))))))))).))).)))))))).))))..))))))).))))....

Structure

----    u       -u    u   a     u   -         U    U     c  cuugauu      c    g     ag 
    gucu gcaugaa  auaa agc uuguu gcU AGCCAAGGA GACU GCCUG gc       gcaaga gagg uuuca  u
    |||| |||||||  |||| ||| ||||| ||| ||||||||| |||| ||||| ||       |||||| |||| |||||   
    cgga cGUACUU  UAUU UCG GACAG cga ucgguuccu cugg cggac cg       uguucu cucc aaggu  g
cuuc    u       UC    C   -     U   a         -    -     -  -uugguu      -    g     cg 

Annotation confidence Not enough data

Genome context

chr2: 11006174-11006335 [+]

Mature csi-miR169h-5p

• Accession: MIMAT0048897
• Description: Citrus sinensis csi-miR169h-5p mature miRNA
• Sequence: 31 - UAGCCAAGGAUGACUUGCCUG - 51
• Evidence: experimental ; Illumina [1]

Mature csi-miR169h-3p

• Accession: MIMAT0057182
• Description: Citrus sinensis csi-miR169h-3p mature miRNA
• Sequence: 131 - UGACAGGCUCUUAUCUUUCAUG - 152
• Evidence: experimental ; unknown

References

1. PubMed ID: 28054378
   MicroRNA annotation of plant genomes - Do it right or not at all
   "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
   Bioessays (2017) 39:1600113