Stem-loop csi-MIR399b

Accession

MI0016713

Description

Citrus sinensis csi-MIR399b precursor miRNA

Literature search

4 open access papers mention csi-MIR399b
(12 sentences)

Sequence

905 reads, 37.0 reads per million, 16 experiments

gaagcaguaagcgauuuaguuguaGGGCUUCUCUCCUUUGGCAGgugauggccaagggcaaagaucauauaauauauuuauauauauggugccuauucuaauuauuguucuauuuuuucaaugaccUGCCAAAGGAGAGUUGCCCUauaacugcuucagcuuuuaaauaa
(((((.(.((((.....(((((((((((..((((((((((((((((.........(((((....((((((((((....))).))))))))))))........(((((...........)))))))))))))))))))))..)))))))))))))))).))))).......

Structure

-------     a u    gauuu           UU                --------------------gauggccaa     aaga       -   u 
       gaagc g aagc     aguuguaGGGC  CUCUCCUUUGGCAGgu                             gggca    ucauaua aua a
       ||||| | ||||     |||||||||||  ||||||||||||||||                             |||||    ||||||| |||  
       uuucg c uucg     ucaauaUCCCG  GAGAGGAAACCGUcca                             uccgu    gguauau uau u
aauaaau     a -    -----           UU                guaacuuuuuuaucuuguuauuaaucuua     ----       a   u 

Annotation confidence Medium

Genome context

chr5: 7022847-7023016 [-]

Mature csi-miR399b-5p

• Accession: MIMAT0037404
• Description: Citrus sinensis csi-miR399b-5p mature miRNA
• Sequence: 25 - GGGCUUCUCUCCUUUGGCAG - 44
• Evidence: experimental ; Illumina [2]

Mature csi-miR399b-3p

• Accession: MIMAT0018470
• Description: Citrus sinensis csi-miR399b-3p mature miRNA
• Sequence: 127 - UGCCAAAGGAGAGUUGCCCU - 146
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 20398412
   Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type
   Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X
   BMC Genomics (2010) 11:246


2. PubMed ID: 28054378
   MicroRNA annotation of plant genomes - Do it right or not at all
   "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
   Bioessays (2017) 39:1600113