Stem-loop csi-MIR396d

Accession

MI0039665

Description

Citrus sinensis csi-MIR396d precursor miRNA

Literature search

1 open access papers mention csi-MIR396d
(1 sentences)

Sequence

6352 reads, 266.0 reads per million, 16 experiments

caucgaaagcaccguuugcccagccauggcCACAGCUUUCUUGAACUUcuuuccuucuucuucuucucuaauuauaggcuacuauuugauguggcuagcugcagcuaucagaagUUCAAGAAAUCUGUGGGAAGaaauggcaaauaagggcuuaauuucuccuu
......((((.(((((((((.........((((((.((((((((((((((.................(((....)))(((((........)))))((((....))))..)))))))))))))).))))))........)))))))..))))))...........

Structure

-----caucga    a  --       cagccaugg      C              uuccuucuucuucuucucuaauuauag     uau 
           aagc cc  guuugcc         cCACAG UUUCUUGAACUUcu                           gcuac   u
           |||| ||  |||||||         |||||| ||||||||||||||                           |||||    
           uucg gg  uaaacgg         GGUGUC AAAGAACUUgaaga                           cggug   u
uuccucuuuaa    -  aa       -uaaaGAAG      U              -------------cuaucgacgucgau     uag 

Annotation confidence Medium

Genome context

chr9: 4490369-4490532 [+]

Mature csi-miR396d-5p

• Accession: MIMAT0057189
• Description: Citrus sinensis csi-miR396d-5p mature miRNA
• Sequence: 31 - CACAGCUUUCUUGAACUU - 48
• Evidence: experimental ; unknown

Mature csi-miR396d-3p

• Accession: MIMAT0048927
• Description: Citrus sinensis csi-miR396d-3p mature miRNA
• Sequence: 115 - UUCAAGAAAUCUGUGGGAAG - 134
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 28054378
   MicroRNA annotation of plant genomes - Do it right or not at all
   "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
   Bioessays (2017) 39:1600113