Stem-loop csi-MIR171h

Accession

MI0039655

Description

Citrus sinensis csi-MIR171h precursor miRNA

Literature search

4 open access papers mention csi-MIR171h
(4 sentences)

Sequence

ggaguaaaguuugauguuggcauagcucaauccgaucaaaauucucagugcagcugaguccuuuauucUGAUUGAGCCGUGCCAAUAUCacauucauuc
.((((..(((.((((((((((((.((((((((.((..(((...((((((...))))))...)))..)).)))))))).)))))))))))).))).))))

Structure

g    aa   u            a        c  uc   auu      g 
 gagu  agu ugauguuggcau gcucaauc ga  aaa   cucagu  
 ||||  ||| |||||||||||| |||||||| ||  |||   |||||| c
 cuua  uua aCUAUAACCGUG CGAGUUAG cu  uuu   gagucg  
-    -c   c            C        U  ua   ccu      a 

Annotation confidence Not enough data

Genome context

chr2: 24735623-24735721 [+]

Mature csi-miR171h-3p

• Accession: MIMAT0048913
• Description: Citrus sinensis csi-miR171h-3p mature miRNA
• Sequence: 69 - UGAUUGAGCCGUGCCAAUAUC - 89
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 28054378
   MicroRNA annotation of plant genomes - Do it right or not at all
   "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
   Bioessays (2017) 39:1600113