Stem-loop csi-MIR172c

Accession

MI0016701

Description

Citrus sinensis csi-MIR172c precursor miRNA

Literature search

5 open access papers mention csi-MIR172c
(15 sentences)

Sequence

1071 reads, 55.0 reads per million, 16 experiments

acuguuugcaguuGGAGCACCAUCAAGAUUCACAaacuauuaggguuagugaguggagauaaugguggcuauuuuauuuuuuuuggccccuugcuucacuucaaauugcucuuuguuuuGGAAUCUUGAUGAUGCUGCAgcagcgauaaguggcuaaauuaua
(((..((((.((((.((((.(((((((((((..((((....(((((...(((((((((.(((.((.(((((............)))))))))))))))).)))....)))))..))))..))))))))))).)))).)))).))))..)))............

Structure

------------   gu    a    G    C           AC    uauu     -uag   -      a   u  u     uuuua 
            acu  uugc guuG AGCA CAUCAAGAUUC  Aaac    agggu    uga guggag uaa gg ggcua     u
            |||  |||| |||| |||| |||||||||||  ||||    |||||    ||| |||||| ||| || |||||      
            uga  agcg cgAC UCGU GUAGUUCUAAG  uuug    ucucg    acu cacuuc guu cc ccggu     u
auauuaaaucgg   au    a    G    A           Gu    --uu     uuaa   u      -   -  -     uuuuu 

Annotation confidence Medium

Genome context

chr7: 31488799-31488961 [+]

Mature csi-miR172c-5p

• Accession: MIMAT0037397
• Description: Citrus sinensis csi-miR172c-5p mature miRNA
• Sequence: 14 - GGAGCACCAUCAAGAUUCACA - 34
• Evidence: experimental ; Illumina [2]

Mature csi-miR172c-3p

• Accession: MIMAT0018458
• Description: Citrus sinensis csi-miR172c-3p mature miRNA
• Sequence: 120 - GGAAUCUUGAUGAUGCUGCA - 139
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 20398412
   Discovery and comparative profiling of microRNAs in a sweet orange red-flesh mutant and its wild type
   Xu Q, Liu Y, Zhu A, Wu X, Ye J, Yu K, Guo W, Deng X
   BMC Genomics (2010) 11:246


2. PubMed ID: 28054378
   MicroRNA annotation of plant genomes - Do it right or not at all
   "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
   Bioessays (2017) 39:1600113