Stem-loop csi-MIR169i

Accession

MI0039644

Description

Citrus sinensis csi-MIR169i precursor miRNA

Literature search

5 open access papers mention csi-MIR169i
(13 sentences)

Sequence

ucuaguuuggUAGCCAAGGAUGACUUGCCUgauucuuccaauuaagcgguuucagauuaaucauauugauuaauuaguuuuuuaaaugaagccauugauggguuaccaggcagucaccuuggcuaacuugacagucucuugucucucaugcuaggc
.(((((.((((((((((((.(((((.(((((.....((((.((((..((((((((((((((((...)))))))))...........))))))).))))))))....)))))))))))))))))))....(((((....)))))..))).)))))..

Structure

-u     u   --------------------         A     U     auucu    a    gc       -----------         u 
  cuagu ugg                    UAGCCAAGG UGACU GCCUg     ucca uuaa  gguuuca           gauuaauca  
  ||||| |||                    ||||||||| ||||| |||||     |||| ||||  |||||||           ||||||||| a
  gaucg acu                    aucgguucc acuga cggac     gggu aguu  ccgaagu           uuaauuagu  
cg     u   cucuguucucugacaguuca         -     -     -cauu    -    -a       aaauuuuuuga         u 

Annotation confidence Not enough data

Genome context

chr2: 11046938-11047093 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from csi-MIR169i

Mature csi-miR169i-5p

• Accession: MIMAT0048898
• Description: Citrus sinensis csi-miR169i-5p mature miRNA
• Sequence: 11 - UAGCCAAGGAUGACUUGCCU - 30
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 28054378
   MicroRNA annotation of plant genomes - Do it right or not at all
   "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
   Bioessays (2017) 39:1600113