Stem-loop csi-MIR169l

Accession

MI0039647

Description

Citrus sinensis csi-MIR169l precursor miRNA

Literature search

5 open access papers mention csi-MIR169l
(12 sentences)

Sequence

1599 reads, 44.0 reads per million, 16 experiments

ucuaacaugaagaaaagagugcuaguuuggUAGCCAAGGAUGACUUGCCUGAUCucuccuaagugguuucaaaacguugaauauuuaaacccucggguggguaccAGGCAGUCUCCUUGGCUAACUUgacagccucucuucuuucaugguagccc
.(((.(((((((((.((((.(((.(((.((((((((((((.((((.(((((..(((.(((.((.((((((((....)))).......)))))).))).)))...)))))))))))))))))).))).)))))))))).))).)))))).)))...

Structure

--u   a      -   a    u   a   u   -         U    U     -AU   u   a  u    -------    a 
   cua caugaa gaa agag gcu guu ggU AGCCAAGGA GACU GCCUG   Cuc ccu ag gguu       ucaa a
   ||| |||||| ||| |||| ||| ||| ||| ||||||||| |||| |||||   ||| ||| || ||||       ||||  
   gau guacuu cuu ucuc cga cag UCA UCGGUUCCU CUGA CGGAc   ggg ggg uc ccaa       aguu c
ccc   g      u   c    -   -   U   A         -    -     cau   u   c  -    auuuaua    g 

Annotation confidence High

Genome context

chr2: 10938344-10938498 [+]

Mature csi-miR169l-5p

• Accession: MIMAT0048901
• Description: Citrus sinensis csi-miR169l-5p mature miRNA
• Sequence: 31 - UAGCCAAGGAUGACUUGCCUGAUC - 54
• Evidence: experimental ; Illumina [1]

Mature csi-miR169l-3p

• Accession: MIMAT0048902
• Description: Citrus sinensis csi-miR169l-3p mature miRNA
• Sequence: 106 - AGGCAGUCUCCUUGGCUAACUU - 127
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 28054378
   MicroRNA annotation of plant genomes - Do it right or not at all
   "Taylor RS, Tarver JE, Foroozani A, Donoghue PC"
   Bioessays (2017) 39:1600113